Stem-loop eca-mir-105a

Accession

MI0012941

Description

Equus caballus eca-mir-105a precursor miRNA

Literature search

4 open access papers mention eca-mir-105a
(7 sentences)

Sequence

321 reads, 31.0 reads per million, 42 experiments

ugugcaucguagUCAAAUGCUCAGACUCCUGUGGUggccguucaugcaccacggauguuugagcaugugcuauggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gccg 
   gcaucguag CA AUGCUCAGAC  CUGUGGUg    u
   ||||||||| || ||||||||||  ||||||||     
   ugugguauc gu uacgaguuug  ggcaccac    u
auc         -  g          ua        guac 

Annotation confidence Not enough data

Genome context

X: 125118240-125118320 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-105a

Mature eca-miR-105a-5p

• Accession: MIMAT0013193
• Description: Equus caballus eca-miR-105a-5p mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUGUGGU - 35
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131