Stem-loop eca-mir-889

Accession

MI0012918

Description

Equus caballus eca-mir-889 precursor miRNA

Sequence

1237 reads, 187 reads per million, 1 experiments

gugcuuaaagaauggcugucuguaguauggucuccauauucauggugaUUAAUAUCGGACAACCAUUGUuuuaguauc
(((((.(((.(((((.((((((..((.(((((.((((....)))).)))))))..)))))).))))).))).))))).

Structure

-     u   g     c      ua  a     u    a 
 gugcu aaa aaugg ugucug  gu ugguc ccau u
 ||||| ||| ||||| ||||||  || ||||| ||||  
 uauga uuU UUACC ACAGGC  UA AUUag ggua u
c     u   G     A      UA  -     u    c 

Annotation confidence Not enough data

Genome context

chr24: 42917940-42918017 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from eca-mir-889

Mature eca-miR-889

• Accession: MIMAT0013175
• Description: Equus caballus eca-miR-889 mature miRNA
• Sequence: 49 - UUAAUAUCGGACAACCAUUGU - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131