Stem-loop eca-mir-770

Accession

MI0012917

Description

Equus caballus eca-mir-770 precursor miRNA

Sequence

347 reads, 12.0 reads per million, 49 experiments

gccgcccuuccgugccuccAGCACCACGUGUCUGGGCCAUGUgagcaaggucacAUGGGCCCGAUGUGGUGCUGGgggcggcagggcucugcucu
((.(((((.((..((((((((((((((((...((((((((((((......)))))).)))))))))))))))))))))))).)))))...))...

Structure

---  --c     u  gu                GUC      -      gc 
   gc   gcccu cc  gccuccAGCACCACGU   UGGGCC AUGUga  a
   ||   ||||| ||  ||||||||||||||||   |||||| ||||||   
   cg   cggga gg  cgggGGUCGUGGUGUA   GCCCGG UAcacu  a
ucu  ucu     c  --                ---      G      gg 

Annotation confidence High

Genome context

24: 43150327-43150421 [+]

Mature eca-miR-770-5p

• Accession: MIMAT0013174
• Description: Equus caballus eca-miR-770-5p mature miRNA
• Sequence: 20 - AGCACCACGUGUCUGGGCCAUGU - 42
• Evidence: not_experimental

Mature eca-miR-770-3p

• Accession: MIMAT0051467
• Description: Equus caballus eca-miR-770-3p mature miRNA
• Sequence: 55 - AUGGGCCCGAUGUGGUGCUGG - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131