Stem-loop eca-mir-655

Accession

MI0012914

Description

Equus caballus eca-mir-655 precursor miRNA

Literature search

1 open access papers mention eca-mir-655
(1 sentences)

Sequence

1667 reads, 42.0 reads per million, 125 experiments

aacuguucaaggauauuugaggAGAGGUUAUCCGUGUUAUGUUCgcuucauucaucaugaAUAAUACAUGGUUAACCUCUUUuugaauaucagacuc
...........(((((((((((((((((((.((((((..((((((............))))))..)))))).)))))))))))))))))))......

Structure

aacuguucaag                   U      UA      cuuca 
           gauauuugaggAGAGGUUA CCGUGU  UGUUCg     u
           ||||||||||||||||||| ||||||  ||||||      
           cuauaaguuUUUCUCCAAU GGUACA  AUAagu     u
-----cucaga                   U      UA      acuac 

Annotation confidence High

Genome context

24: 43358226-43358322 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from eca-mir-655

Mature eca-miR-655-5p

• Accession: MIMAT0051464
• Description: Equus caballus eca-miR-655-5p mature miRNA
• Sequence: 23 - AGAGGUUAUCCGUGUUAUGUUC - 44
• Evidence: not_experimental

Mature eca-miR-655-3p

• Accession: MIMAT0013171
• Description: Equus caballus eca-miR-655-3p mature miRNA
• Sequence: 61 - AUAAUACAUGGUUAACCUCUUU - 82
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131