Stem-loop eca-mir-543

Accession

MI0012912

Description

Equus caballus eca-mir-543 precursor miRNA

Literature search

1 open access papers mention eca-mir-543
(1 sentences)

Sequence

163852 reads, 450.0 reads per million, 207 experiments

cuuaaggaGAAGUUGCCCGUGUUUUUUUCGcuuuauuugugacgAAACAUUCGCGGUGCACUUCUUuuucag
((.((((((((((.(((((((..(.((((((.........).))))).)..))))).)))))))))))).))

Structure

  u          U  -     UU U     - uuu 
cu aaggaGAAGU GC CCGUG  U UUUCG c   a
|| |||||||||| || |||||  | ||||| |   u
ga uuuUUCUUCA CG GGCGC  A AAAgc g   u
  c          -  U     UU C     a ugu 

Annotation confidence High

Genome context

24: 43342877-43342948 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from eca-mir-543

Mature eca-miR-543-5p

• Accession: MIMAT0051462
• Description: Equus caballus eca-miR-543-5p mature miRNA
• Sequence: 9 - GAAGUUGCCCGUGUUUUUUUCG - 30
• Evidence: not_experimental

Mature eca-miR-543-3p

• Accession: MIMAT0013169
• Description: Equus caballus eca-miR-543-3p mature miRNA
• Sequence: 45 - AAACAUUCGCGGUGCACUUCUU - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131