Stem-loop eca-mir-433

Accession

MI0012902

Description

Equus caballus eca-mir-433 precursor miRNA

Literature search

2 open access papers mention eca-mir-433
(90 sentences)

Sequence

68 reads, 10 reads per million, 1 experiments

ugcccggggagaaguacggugagccugucauuauucagagaggcuagauccucuguguuaagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagguagcggcaccacaccaugaaggcagccc
((((...((((((...(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).)))...)))))).))))..(((.((..........))..))).

Structure

--------------------------    cgg      gua   u           u   --------  g     cu 
                          ugcc   ggagaa   cgg gagccugucau auu        ca agagg  a
                          ||||   ||||||   ||| ||||||||||| |||        || |||||   
                          augg   ccucuU   GCU CUCGGGUAGUA UAg        gu ucucc  g
cccgacggaaguaccacaccacggcg    --a      GUG   C           C   gaagaauu  g     ua 

Annotation confidence Low

Genome context

chr24: 42745895-42746018 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-433

Mature eca-miR-433

• Accession: MIMAT0013158
• Description: Equus caballus eca-miR-433 mature miRNA
• Sequence: 67 - AUCAUGAUGGGCUCCUCGGUGU - 88
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131