Stem-loop eca-mir-382

Accession

MI0012895

Description

Equus caballus eca-mir-382 precursor miRNA

Literature search

1 open access papers mention eca-mir-382
(2 sentences)

Sequence

97729 reads, 193.0 reads per million, 203 experiments

uacuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuuaugacgAAUCAUUCACGGACAACACUUUuuucagua
((((.(((((((.(((((((((((..(((((((.........).))))))..)))))))))))..)))))))))))

Structure

    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuUUU  CAACAGGCACU  CUAAgc g   u
    -       CA           UA      a uau 

Annotation confidence High

Genome context

24: 43363494-43363569 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from eca-mir-382

Mature eca-miR-382-5p

• Accession: MIMAT0013150
• Description: Equus caballus eca-miR-382-5p mature miRNA
• Sequence: 11 - GAAGUUGUUCGUGGUGGAUUCG - 32
• Evidence: not_experimental

Mature eca-miR-382-3p

• Accession: MIMAT0061116
• Description: Equus caballus eca-miR-382-3p mature miRNA
• Sequence: 47 - AAUCAUUCACGGACAACACUUU - 68
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131