Stem-loop eca-mir-299

Accession

MI0012880

Description

Equus caballus eca-mir-299 precursor miRNA

Literature search

3 open access papers mention eca-mir-299
(3 sentences)

Sequence

41374 reads, 190.0 reads per million, 212 experiments

aagaaaUGGUUUACCGUCCCACAUACAUUuugaguaugUAUGUGGGAUGGUAAACCGCUUcuu
(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))

Structure

     a                      Uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGUAGGGUGUAUgua  a
     C                      ug 

Annotation confidence High

Genome context

24: 43334993-43335055 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from eca-mir-299

Mature eca-miR-299-5p

• Accession: MIMAT0061113
• Description: Equus caballus eca-miR-299-5p mature miRNA
• Sequence: 7 - UGGUUUACCGUCCCACAUACAUU - 29
• Evidence: not_experimental

Mature eca-miR-299-3p

• Accession: MIMAT0013130
• Description: Equus caballus eca-miR-299-3p mature miRNA
• Sequence: 39 - UAUGUGGGAUGGUAAACCGCUU - 60
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131