Stem-loop eca-mir-134

Accession

MI0012877

Description

Equus caballus eca-mir-134 precursor miRNA

Literature search

7 open access papers mention eca-mir-134
(7 sentences)

Sequence

37075 reads, 360.0 reads per million, 190 experiments

agggugUGUGACUGGUUGACCAGAGGGGcaagcacucuguucaccCUGUGGGCCACCUAGUCACCAAcccu
(((((..((((((((.((.(((.((((...((((...))))..)))).)))..)).))))))))..)))))

Structure

     gU        U  -A   G    Gca    c 
agggu  GUGACUGG UG  CCA AGGG   agca  
|||||  |||||||| ||  ||| ||||   |||| u
ucccA  CACUGAUC AC  GGU UCcc   uugu  
     AC        C  CG   G    -ac    c 

Annotation confidence High

Genome context

24: 43363877-43363947 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from eca-mir-134

Mature eca-miR-134-5p

• Accession: MIMAT0013127
• Description: Equus caballus eca-miR-134-5p mature miRNA
• Sequence: 7 - UGUGACUGGUUGACCAGAGGGG - 28
• Evidence: not_experimental

Mature eca-miR-134-3p

• Accession: MIMAT0051441
• Description: Equus caballus eca-miR-134-3p mature miRNA
• Sequence: 46 - CUGUGGGCCACCUAGUCACCAA - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131