Stem-loop eca-mir-873

Accession

MI0012871

Description

Equus caballus eca-mir-873 precursor miRNA

Literature search

1 open access papers mention eca-mir-873
(61 sentences)

Sequence

2650 reads, 16.0 reads per million, 108 experiments

gugugcauuUGCAGGAACUUGUGAGUCUCCUauugaaaaugaacagGAGACUGAUGAGUUCCCGGGAAcacccacaa
(((.(..(((.(.(((((((((.((((((((.((.......)).)))))))).))))))))).).)))..).)))..

Structure

--   u ca   G A         G        a  ga 
  gug g  uuU C GGAACUUGU AGUCUCCU uu  a
  ||| |  ||| | ||||||||| |||||||| ||  a
  cac c  AAG G CCUUGAGUA UCAGAGga aa  a
aa   c ac   G C         G        c  gu 

Annotation confidence High

Genome context

23: 46232409-46232485 [-]

Mature eca-miR-873-5p

• Accession: MIMAT0013120
• Description: Equus caballus eca-miR-873-5p mature miRNA
• Sequence: 10 - UGCAGGAACUUGUGAGUCUCCU - 31
• Evidence: experimental ; Illumina [1]

Mature eca-miR-873-3p

• Accession: MIMAT0061110
• Description: Equus caballus eca-miR-873-3p mature miRNA
• Sequence: 47 - GAGACUGAUGAGUUCCCGGGAA - 68
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131