Stem-loop eca-mir-872

Accession

MI0012870

Description

Equus caballus eca-mir-872 precursor miRNA

Sequence

47691 reads, 80.0 reads per million, 161 experiments

uacuuguuagAAGGUUACUUGUUAGUUCAGGAccucguuauuucuugccUGAACUUUGCAGUAGCCUCCUaacuggucuc
.(((.(((((.((((((((.((.((((((((................))))))))..)))))))))).))))).)))...

Structure

--u   u     A        U  -U        Accucgu 
   acu guuag AGGUUACU GU  AGUUCAGG       u
   ||| ||||| |||||||| ||  ||||||||        
   ugg caaUC UCCGAUGA CG  UCAAGUcc       a
cuc   u     C        -  UU        guucuuu 

Annotation confidence High

Genome context

23: 44521279-44521358 [+]

Mature eca-miR-872-5p

• Accession: MIMAT0013119
• Description: Equus caballus eca-miR-872-5p mature miRNA
• Sequence: 11 - AAGGUUACUUGUUAGUUCAGGA - 32
• Evidence: experimental ; Illumina [1]

Mature eca-miR-872-3p

• Accession: MIMAT0051437
• Description: Equus caballus eca-miR-872-3p mature miRNA
• Sequence: 50 - UGAACUUUGCAGUAGCCUCCU - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131