Stem-loop eca-mir-7-3

Accession

MI0012869

Description

Equus caballus eca-mir-7-3 precursor miRNA

Literature search

1 open access papers mention eca-mir-7-3
(4 sentences)

Sequence

307046 reads, 859.0 reads per million, 192 experiments

uggucuaguucugugUGGAAGACUAGUGAUUUUGUUGUUuguagauaacuaaaucgaCAACAAAUCACAGUCUGCCAUAuggcacagg
....((.((.((((((((.(((((.(((((((.((((((..(((....)))....)))))))))))))))))).)))))))).)))).

Structure

uggu  a  u        A     A       U      --ug   a 
    cu gu cugugUGG AGACU GUGAUUU GUUGUU    uag u
    || || |||||||| ||||| ||||||| ||||||    |||  
    ga ca gguAUACC UCUGA CACUAAA CAACag    auc a
---g  -  c        G     -       -      cuaa   a 

Annotation confidence High

Genome context

23: 6940625-6940712 [-]

Mature eca-miR-7-5p

• Accession: MIMAT0012905
• Description: Equus caballus eca-miR-7-5p mature miRNA
• Sequence: 16 - UGGAAGACUAGUGAUUUUGUUGUU - 39
• Evidence: experimental

Mature eca-miR-7-3-3p

• Accession: MIMAT0051368
• Description: Equus caballus eca-miR-7-3-3p mature miRNA
• Sequence: 58 - CAACAAAUCACAGUCUGCCAUA - 79
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131