Stem-loop eca-mir-31

Accession

MI0012866

Description

Equus caballus eca-mir-31 precursor miRNA

Literature search

11 open access papers mention eca-mir-31
(24 sentences)

Sequence

573418 reads, 976.0 reads per million, 206 experiments

ggagaggAGGCAAGAUGCUGGCAUAGCUGUUGaacugagaaccUGCUAUGCCAACAUAUUGCCAUCU
....(((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).)))

Structure

ggag   A     G   C         -U   Gaa 
    agg GGCAA AUG UGGCAUAGC  GUU   c
    ||| ||||| ||| |||||||||  |||    
    UCU CCGUU UAC ACCGUAUCG  caa   u
----   A     A   A         Uc   gag 

Annotation confidence High

Genome context

23: 40089698-40089764 [-]

Mature eca-miR-31-5p

• Accession: MIMAT0013115
• Description: Equus caballus eca-miR-31-5p mature miRNA
• Sequence: 8 - AGGCAAGAUGCUGGCAUAGCUGUUG - 32
• Evidence: experimental ; Illumina [1]

Mature eca-miR-31-3p

• Accession: MIMAT0051436
• Description: Equus caballus eca-miR-31-3p mature miRNA
• Sequence: 44 - UGCUAUGCCAACAUAUUGCCAUCU - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131