Stem-loop eca-mir-296

Accession

MI0012857

Description

Equus caballus eca-mir-296 precursor miRNA

Literature search

2 open access papers mention eca-mir-296
(2 sentences)

Sequence

6303 reads, 128.0 reads per million, 159 experiments

aggacucuuccgGAGGGCCCCCCCCAAUCCUGUUGuguuugauucagAGGGUUGGGUGGAGGCUUUCCUGaaggcucu
.(((.(((((.((((((((.(((((((((((.(((.........)))))))))))).)).)))))))).))))).)))

Structure

a   c     c        C  -         G   ugu 
 gga ucuuc gGAGGGCC CC CCCAAUCCU UUG   u
 ||| ||||| |||||||| || ||||||||| |||   u
 ucu ggaaG CCUUUCGG GG GGGUUGGGA gac   g
-   c     U        A  U         -   uua 

Annotation confidence High

Genome context

22: 46180494-46180571 [-]

Mature eca-miR-296-5p

• Accession: MIMAT0051431
• Description: Equus caballus eca-miR-296-5p mature miRNA
• Sequence: 13 - GAGGGCCCCCCCCAAUCCUGUUG - 35
• Evidence: not_experimental

Mature eca-miR-296-3p

• Accession: MIMAT0013107
• Description: Equus caballus eca-miR-296-3p mature miRNA
• Sequence: 48 - AGGGUUGGGUGGAGGCUUUCCUG - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131