Stem-loop eca-mir-1-2

Accession

MI0012853

Description

Equus caballus eca-mir-1-2 precursor miRNA

Literature search

6 open access papers mention eca-mir-1-2
(16 sentences)

Sequence

134527496 reads, 77766.0 reads per million, 173 experiments

gcuugggaaACAUACUUCUUUAUAUGCCCAUAuggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAUuucagg
.(((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))

Structure

g       a                GC     ---   a 
 cuuggga ACAUACUUCUUUAUAU  CCAUA   ugg c
 ||||||| ||||||||||||||||  |||||   ||| c
 ggacuuU UGUAUGAAGAAAUGUA  GGUau   auc u
-       A                -A     cga   g 

Annotation confidence High

Genome context

22: 49406936-49407011 [+]

Mature eca-miR-1-2-5p

• Accession: MIMAT0051370
• Description: Equus caballus eca-miR-1-2-5p mature miRNA
• Sequence: 10 - ACAUACUUCUUUAUAUGCCCAUA - 32
• Evidence: not_experimental

Mature eca-miR-1-3p

• Accession: MIMAT0012994
• Description: Equus caballus eca-miR-1-3p mature miRNA
• Sequence: 49 - UGGAAUGUAAAGAAGUAUGUAU - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131