Stem-loop eca-mir-449a

Accession

MI0012851

Description

Equus caballus eca-mir-449a precursor miRNA

Literature search

2 open access papers mention eca-mir-449a
(2 sentences)

Sequence

192446 reads, 2845.0 reads per million, 172 experiments

UGGCAGUGUAUUGUUAGCUGGUugaauauaugaauggcauCAGCUAACAAGCAACUGCUA
(((((((...((((((((((((...((......))...))))))))))))...)))))))

Structure

       GUA            uga  au 
UGGCAGU   UUGUUAGCUGGU   au  a
|||||||   ||||||||||||   ||   
AUCGUCA   AACAAUCGACua   ua  u
       ACG            cgg  ag 

Annotation confidence High

Genome context

21: 17771326-17771385 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-449a

Mature eca-miR-449a-5p

• Accession: MIMAT0013102
• Description: Equus caballus eca-miR-449a-5p mature miRNA
• Sequence: 1 - UGGCAGUGUAUUGUUAGCUGGU - 22
• Evidence: not_experimental

Mature eca-miR-449a-3p

• Accession: MIMAT0051429
• Description: Equus caballus eca-miR-449a-3p mature miRNA
• Sequence: 41 - CAGCUAACAAGCAACUGCUA - 60
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131