Stem-loop eca-mir-19b-1

Accession

MI0012834

Description

Equus caballus eca-mir-19b-1 precursor miRNA

Literature search

11 open access papers mention eca-mir-19b-1
(18 sentences)

Sequence

248889 reads, 731.0 reads per million, 185 experiments

guuAGUUUUGCAGGUUUGCAUCCAGCUGugugauguucugcUGUGCAAAUCCAUGCAAAACUGA
.(((((((((((((((((((..((((.............)))))))))).)).)))))))))))

Structure

g           -  -      UC    UGugu 
 uuAGUUUUGCA GG UUUGCA  CAGC     g
 ||||||||||| || ||||||  ||||     a
 AGUCAAAACGU CC AAACGU  GUcg     u
-           A  U      --    ucuug 

Annotation confidence High

Genome context

17: 61685628-61685691 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-19b-1

Mature eca-miR-19b-5p

• Accession: MIMAT0051417
• Description: Equus caballus eca-miR-19b-5p mature miRNA
• Sequence: 4 - AGUUUUGCAGGUUUGCAUCCAGCUG - 28
• Evidence: not_experimental

Mature eca-miR-19b-3p

• Accession: MIMAT0013087
• Description: Equus caballus eca-miR-19b-3p mature miRNA
• Sequence: 42 - UGUGCAAAUCCAUGCAAAACUGA - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131