Stem-loop eca-mir-885

Accession

MI0012828

Description

Equus caballus eca-mir-885 precursor miRNA

Literature search

1 open access papers mention eca-mir-885
(1 sentences)

Sequence

42700 reads, 84.0 reads per million, 163 experiments

ccgcgcucucUCCAUUACACUACCCUGCCUCUUcuccaugagAGGCAGCGGGGUGUAGUGGAUagagcacgggu
(((.(((((.(((((((((((.(((((((((((......))))))))).))))))))))))).))))).)))..

Structure

--   c     c           A  -         cu 
  ccg gcucu UCCAUUACACU CC CUGCCUCUU  c
  ||| ||||| ||||||||||| || |||||||||   
  ggc cgaga AGGUGAUGUGG GG GACGGAgag  c
ug   a     U           -  C         ua 

Annotation confidence High

Genome context

16: 8057788-8057861 [+]

Mature eca-miR-885-5p

• Accession: MIMAT0013081
• Description: Equus caballus eca-miR-885-5p mature miRNA
• Sequence: 11 - UCCAUUACACUACCCUGCCUCUU - 33
• Evidence: not_experimental

Mature eca-miR-885-3p

• Accession: MIMAT0013082
• Description: Equus caballus eca-miR-885-3p mature miRNA
• Sequence: 43 - AGGCAGCGGGGUGUAGUGGAU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131