Stem-loop eca-mir-138b

Accession

MI0012824

Description

Equus caballus eca-mir-138b precursor miRNA

Literature search

1 open access papers mention eca-mir-138b
(2 sentences)

Sequence

160143 reads, 296.0 reads per million, 117 experiments

AGCUGGUGUUGUGAAUCAGGCCGUugccaaucagagaaCGGCUACUUCACAACACCAGG
..(((((((((((((...(((((((..(.....)..)))))))..))))))))))))).

Structure

AG             UCA       gc a 
  CUGGUGUUGUGAA   GGCCGUu  c a
  |||||||||||||   |||||||  | u
  GACCACAACACUU   UCGGCaa  g c
-G             -CA       ga a 

Annotation confidence High

Genome context

16: 43830202-43830260 [-]

Mature eca-miR-138b-5p

• Accession: MIMAT0061616
• Description: Equus caballus eca-miR-138b-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCGU - 24
• Evidence: experimental ; Illumina [1]

Mature eca-miR-138b-3p

• Accession: MIMAT0051330
• Description: Equus caballus eca-miR-138b-3p mature miRNA
• Sequence: 39 - CGGCUACUUCACAACACCAGG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131