Stem-loop eca-mir-128-1

Accession

MI0012821

Description

Equus caballus eca-mir-128-1 precursor miRNA

Literature search

2 open access papers mention eca-mir-128-1
(21 sentences)

Sequence

1975547 reads, 2811.0 reads per million, 239 experiments

ugugcagugggaagGGGGGCCGAUGCACUGUACGAGAgugaguagcaggucUCACAGUGAACCGGUCUCUUUcccuacuguguc
...((((((((.((((((((((...((((((..((((.(........).))))))))))...)))))))))).))))))))...

Structure

ugu        a          AUG      AC    g gag 
   gcaguggg agGGGGGCCG   CACUGU  GAGA u   u
   |||||||| ||||||||||   ||||||  |||| |    
   ugucaucc UUUCUCUGGC   GUGACA  CUcu g   a
cug        c          CAA      --    g acg 

Annotation confidence High

Genome context

16: 50693927-50694010 [-]

Mature eca-miR-128-1-5p

• Accession: MIMAT0051409
• Description: Equus caballus eca-miR-128-1-5p mature miRNA
• Sequence: 15 - GGGGGCCGAUGCACUGUACGAGA - 37
• Evidence: not_experimental

Mature eca-miR-128-3p

• Accession: MIMAT0013076
• Description: Equus caballus eca-miR-128-3p mature miRNA
• Sequence: 52 - UCACAGUGAACCGGUCUCUUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131