Stem-loop eca-mir-107a

Accession

MI0012805

Description

Equus caballus eca-mir-107a precursor miRNA

Literature search

3 open access papers mention eca-mir-107a
(7 sentences)

Sequence

2054719 reads, 4449.0 reads per million, 238 experiments

ucGGCUUCUUUACAGUGCUGCCUUGUugcggauggaucaAGCAGCAUUGUACAGGGCUAUGA
..((((.((.(((((((((((.(((.(.(....).).)))))))))))))).))))))....

Structure

--uc    U  U           C   U g g 
    GGCU CU UACAGUGCUGC UUG u c g
    |||| || ||||||||||| ||| | |  
    UCGG GA AUGUUACGACG Aac a g a
AGUA    -  C           -   u g u 

Annotation confidence High

Genome context

14: 11601950-11602011 [+]

Mature eca-miR-107a-5p

• Accession: MIMAT0051401
• Description: Equus caballus eca-miR-107a-5p mature miRNA
• Sequence: 3 - GGCUUCUUUACAGUGCUGCCUUGU - 26
• Evidence: not_experimental

Mature eca-miR-107a-3p

• Accession: MIMAT0013061
• Description: Equus caballus eca-miR-107a-3p mature miRNA
• Sequence: 40 - AGCAGCAUUGUACAGGGCUAUGA - 62
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131