Stem-loop eca-mir-675

Accession

MI0012796

Description

Equus caballus eca-mir-675 precursor miRNA

Literature search

8 open access papers mention eca-mir-675
(24 sentences)

Sequence

42420 reads, 66.0 reads per million, 152 experiments

cccaggggcUGGCGCGGAGAGGGCCCACAGUGcacucagugacaCUGUAUGCCUUCACCGCUCAGCcccuggg
((((((((((((.((((.((((((..(((((((((...))).))))))..)))))).))))))))))))))))

Structure

            C    A      CC      -   u 
cccaggggcUGG GCGG GAGGGC  ACAGUG cac  
|||||||||||| |||| ||||||  |||||| ||| c
gggucccCGACU CGCC CUUCCG  UGUCac gug  
            -    A      UA      a   a 

Annotation confidence High

Genome context

12: 34335950-34336022 [-]

Mature eca-miR-675-5p

• Accession: MIMAT0013053
• Description: Equus caballus eca-miR-675-5p mature miRNA
• Sequence: 10 - UGGCGCGGAGAGGGCCCACAGUG - 32
• Evidence: not_experimental

Mature eca-miR-675-3p

• Accession: MIMAT0051395
• Description: Equus caballus eca-miR-675-3p mature miRNA
• Sequence: 45 - CUGUAUGCCUUCACCGCUCAGC - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131