Stem-loop eca-mir-130a

Accession

MI0012790

Description

Equus caballus eca-mir-130a precursor miRNA

Literature search

12 open access papers mention eca-mir-130a
(53 sentences)

Sequence

458921 reads, 671.0 reads per million, 214 experiments

gaGCUCUUUUCACAUUGUGCUACUGUcugcaccuaccacuagCAGUGCAAUGUUAAAAGGGCAU
..((((((((.((((((((((.(((..............))).)))))))))).))))))))..

Structure

ga        C          A   Ucugca 
  GCUCUUUU ACAUUGUGCU CUG      c
  |||||||| |||||||||| |||       
  CGGGAAAA UGUAACGUGA gau      c
UA        U          C   caccau 

Annotation confidence High

Genome context

12: 21235999-21236062 [+]

Mature eca-miR-130a-5p

• Accession: MIMAT0051391
• Description: Equus caballus eca-miR-130a-5p mature miRNA
• Sequence: 3 - GCUCUUUUCACAUUGUGCUACUGU - 26
• Evidence: not_experimental

Mature eca-miR-130a-3p

• Accession: MIMAT0013047
• Description: Equus caballus eca-miR-130a-3p mature miRNA
• Sequence: 43 - CAGUGCAAUGUUAAAAGGGCAU - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131