Stem-loop eca-mir-187

Accession

MI0012751

Description

Equus caballus eca-mir-187 precursor miRNA

Literature search

2 open access papers mention eca-mir-187
(2 sentences)

Sequence

10468 reads, 16.0 reads per million, 136 experiments

ucggGCUACAACACGGGACCCGGGCGcugcuccgaccccUCGUGUCUUGUGUUGCAGCCGG
...((((.((((((((((((.(((((......)).)))...).))))))))))).))))..

Structure

ucg    A           - --C   -  cu 
   gGCU CAACACGGGAC C   GGG CG  g
   |||| ||||||||||| |   ||| ||   
   CCGA GUUGUGUUCUG G   ccc gc  c
-GG    C           U CUc   a  cu 

Annotation confidence High

Genome context

8: 59511287-59511347 [-]

Mature eca-miR-187-5p

• Accession: MIMAT0051375
• Description: Equus caballus eca-miR-187-5p mature miRNA
• Sequence: 5 - GCUACAACACGGGACCCGGGCG - 26
• Evidence: not_experimental

Mature eca-miR-187-3p

• Accession: MIMAT0012999
• Description: Equus caballus eca-miR-187-3p mature miRNA
• Sequence: 40 - UCGUGUCUUGUGUUGCAGCCGG - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131