Stem-loop eca-mir-27a

Accession

MI0012739

Description

Equus caballus eca-mir-27a precursor miRNA

Literature search

17 open access papers mention eca-mir-27a
(123 sentences)

Sequence

8249615 reads, 10762.0 reads per million, 239 experiments

cuggggagcAGGGCUUAGCUGCUUGUGAGCAggguccacaccgagucaugUUCACAGUGGCUAAGUUCCGCcccccg
..((((.((.(((((((((((((.(((((((((.((......)).)).)))))))))))))))))))).)).)))).

Structure

cu    a  A             U       -  g  ca 
  gggg gc GGGCUUAGCUGCU GUGAGCA gg uc  c
  |||| || ||||||||||||| ||||||| || ||   
  cccc CG CUUGAAUCGGUGA CACUUgu cu ag  a
-g    c  C             -       a  g  cc 

Annotation confidence High

Genome context

7: 46233206-46233282 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from eca-mir-27a

Mature eca-miR-27a-5p

• Accession: MIMAT0051364
• Description: Equus caballus eca-miR-27a-5p mature miRNA
• Sequence: 10 - AGGGCUUAGCUGCUUGUGAGCA - 31
• Evidence: not_experimental

Mature eca-miR-27a-3p

• Accession: MIMAT0012988
• Description: Equus caballus eca-miR-27a-3p mature miRNA
• Sequence: 51 - UUCACAGUGGCUAAGUUCCGC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131