Stem-loop eca-mir-139

Accession

MI0012735

Description

Equus caballus eca-mir-139 precursor miRNA

Literature search

7 open access papers mention eca-mir-139
(7 sentences)

Sequence

444353 reads, 685.0 reads per million, 206 experiments

uacUCUACAGUGCACGUGUCUCCAGUguggcuccgaggcUGGAGACGCGGCCCUGUUGGAGUa
((((((((((.((.((((((((((((.(.(...).).)))))))))))))).))).)))))))

Structure

       -   U  A            g g c 
uacUCUA CAG GC CGUGUCUCCAGU u g  
||||||| ||| || |||||||||||| | | u
aUGAGGU GUC CG GCGCAGAGGUcg a c  
       U   C  -            g g c 

Annotation confidence High

Genome context

7: 73259101-73259163 [+]

Mature eca-miR-139-5p

• Accession: MIMAT0012983
• Description: Equus caballus eca-miR-139-5p mature miRNA
• Sequence: 4 - UCUACAGUGCACGUGUCUCCAGU - 26
• Evidence: not_experimental

Mature eca-miR-139-3p

• Accession: MIMAT0012984
• Description: Equus caballus eca-miR-139-3p mature miRNA
• Sequence: 40 - UGGAGACGCGGCCCUGUUGGAGU - 62
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131