Stem-loop eca-mir-197

Accession

MI0012711

Description

Equus caballus eca-mir-197 precursor miRNA

Literature search

5 open access papers mention eca-mir-197
(7 sentences)

Sequence

173787 reads, 384.0 reads per million, 193 experiments

ggcugugcCGGGUAGAGAGGGCAGUGGGAGGUaagagcucuucacccUUCACCACCUUCUCCACCCAGCAuggcc
((((((((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))))))))

Structure

        C    A       CA     A   -   a 
ggcugugc GGGU GAGAGGG  GUGGG GGU aag g
|||||||| |||| |||||||  ||||| ||| |||  
ccgguACG CCCA CUCUUCC  CACUU cca uuc c
        A    C       AC     c   c   u 

Annotation confidence High

Genome context

5: 55117031-55117105 [-]

Mature eca-miR-197-5p

• Accession: MIMAT0051347
• Description: Equus caballus eca-miR-197-5p mature miRNA
• Sequence: 9 - CGGGUAGAGAGGGCAGUGGGAGGU - 32
• Evidence: not_experimental

Mature eca-miR-197-3p

• Accession: MIMAT0012959
• Description: Equus caballus eca-miR-197-3p mature miRNA
• Sequence: 48 - UUCACCACCUUCUCCACCCAGCA - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131