Stem-loop eca-mir-653

Accession

MI0012700

Description

Equus caballus eca-mir-653 precursor miRNA

Sequence

1950 reads, 23.0 reads per million, 70 experiments

ucauuccuucagugUUGAAACAAUCUCUGCUGAACCaggcuccaaacuacgUUCACUGGAGUUUGUUUCAAUauugcaagaauga
((((((...((((((((((((((.(((((.(((((.((........))..))))).))))).))))))))))))))...))))))

Structure

      cuu              U     C     -C  gcu 
ucauuc   cagugUUGAAACAA CUCUG UGAAC  ag   c
||||||   |||||||||||||| ||||| |||||  ||    
aguaag   guuaUAACUUUGUU GAGGU ACUUg  uc   c
      aac              U     C     ca  aaa 

Annotation confidence High

Genome context

4: 37174800-37174884 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-653

Mature eca-miR-653-5p

• Accession: MIMAT0051340
• Description: Equus caballus eca-miR-653-5p mature miRNA
• Sequence: 15 - UUGAAACAAUCUCUGCUGAACC - 36
• Evidence: not_experimental

Mature eca-miR-653-3p

• Accession: MIMAT0012947
• Description: Equus caballus eca-miR-653-3p mature miRNA
• Sequence: 52 - UUCACUGGAGUUUGUUUCAAU - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131