Stem-loop eca-mir-30c

Accession

MI0012671

Description

Equus caballus eca-mir-30c precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

4 open access papers mention eca-mir-30c
(9 sentences)

Sequence

6659 reads, 1008 reads per million, 1 experiments

accaugcuguagugugUGUAAACAUCCUACACUCUCAGCugugagcucaagguggcugggagaggguuguuuacuccuucugccaugga
.(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))))))).

Structure

a     cu    ugu U       U   ACA         guga   c 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    gcu  
 |||||  ||||   | ||||||| |||   |||||||||    ||| a
 gguac  cguc   c cauuugu ggg   gagggucgg    ugg  
a     --    uuc u       u   --a         ----   a 

Annotation confidence High

Genome context

chr2: 17432728-17432816 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-30c

Mature eca-miR-30c

• Accession: MIMAT0012915
• Description: Equus caballus eca-miR-30c mature miRNA
• Sequence: 17 - UGUAAACAUCCUACACUCUCAGC - 39
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131