Stem-loop eca-mir-302a

Accession

MI0012667

Description

Equus caballus eca-mir-302a precursor miRNA

Literature search

6 open access papers mention eca-mir-302a
(25 sentences)

Sequence

10267 reads, 6016.0 reads per million, 79 experiments

ccaccACUUAAACGUGGAUGUACUUGCUuugaaacuauaaaagUAAGUGCUUCCAUGUUUUAGUGAug
....((((.(((((((((.(((((((((((.........))))))))))).))))))))).))))...

Structure

ccac    U         U           gaa 
    cACU AAACGUGGA GUACUUGCUuu   a
    |||| ||||||||| |||||||||||   c
    GUGA UUUGUACCU CGUGAAUgaaa   u
-guA    U         U           aua 

Annotation confidence High

Genome context

2: 114120747-114120814 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from eca-mir-302a

Mature eca-miR-302a-5p

• Accession: MIMAT0051323
• Description: Equus caballus eca-miR-302a-5p mature miRNA
• Sequence: 6 - ACUUAAACGUGGAUGUACUUGCU - 28
• Evidence: not_experimental

Mature eca-miR-302a-3p

• Accession: MIMAT0012911
• Description: Equus caballus eca-miR-302a-3p mature miRNA
• Sequence: 44 - UAAGUGCUUCCAUGUUUUAGUGA - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131