Stem-loop eca-mir-628a

Accession

MI0012659

Description

Equus caballus eca-mir-628a precursor miRNA

Sequence

51268 reads, 120.0 reads per million, 188 experiments

auagcuguugugucacuuccucAUGCUGACAUAUUUACUAGAGGguaaaauuaauaaccuUCUAGUAAGAGUGGCAGUCGAAgggaagggcucau
........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).)).

Structure

auagcugu  u   a      -cAU    A   A             aaaa 
        ug guc cuuccu    GCUG CAU UUUACUAGAGGgu    u
        || ||| ||||||    |||| ||| |||||||||||||     
        ac cgg gaaggg    UGAC GUG GAAUGAUCUucca    u
-------u  u   -      AAGC    G   A             auaa 

Annotation confidence High

Genome context

gb|PJAA01003623.1|: 40372-40466 [+]

Mature eca-miR-628a-5p

• Accession: MIMAT0012903
• Description: Equus caballus eca-miR-628a-5p mature miRNA
• Sequence: 23 - AUGCUGACAUAUUUACUAGAGG - 44
• Evidence: not_experimental

Mature eca-miR-628a-3p

• Accession: MIMAT0061084
• Description: Equus caballus eca-miR-628a-3p mature miRNA
• Sequence: 61 - UCUAGUAAGAGUGGCAGUCGAA - 82
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131