Stem-loop eca-mir-208a

Accession

MI0012655

Description

Equus caballus eca-mir-208a precursor miRNA

Literature search

10 open access papers mention eca-mir-208a
(15 sentences)

Sequence

1658 reads, 137.0 reads per million, 74 experiments

uuccugugacgggcGAGCUUUUGGCCCGGGUUAUACcugaugcucacguAUAAGACGAGCAAAAAGCUUGUuggucagaggag
.((((.((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).)))).)))).

Structure

u    g    g           G  C  GG      c   u 
 uccu ugac ggcGAGCUUUU GC CG  UUAUAC uga  
 |||| |||| ||||||||||| || ||  |||||| ||| g
 agga acug uUGUUCGAAAA CG GC  AAUAug acu  
g    g    g           A  A  AG      c   c 

Annotation confidence High

Genome context

1: 163278769-163278851 [-]

Mature eca-miR-208a-5p

• Accession: MIMAT0051316
• Description: Equus caballus eca-miR-208a-5p mature miRNA
• Sequence: 15 - GAGCUUUUGGCCCGGGUUAUAC - 36
• Evidence: not_experimental

Mature eca-miR-208a-3p

• Accession: MIMAT0012899
• Description: Equus caballus eca-miR-208a-3p mature miRNA
• Sequence: 50 - AUAAGACGAGCAAAAAGCUUGU - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131