Stem-loop eca-mir-1296

Accession

MI0012647

Description

Equus caballus eca-mir-1296 precursor miRNA

Literature search

1 open access papers mention eca-mir-1296
(1 sentences)

Sequence

26722 reads, 85.0 reads per million, 207 experiments

accuaccuaacugggUUAGGGCCCUGGCUCCAUCUCCUuuaggaaaaccuucuuuggggAGUGGGGCUUCGACCCUAACCcagcugggcugu
.....((((.(((((((((((....(((((((.((((((.(((((....))))).)))))))))))))....))))))))))).))))....

Structure

accua    a           CCCU       U      u     a 
     ccua cugggUUAGGG    GGCUCCA CUCCUu aggaa a
     |||| |||||||||||    ||||||| |||||| |||||  
     gggu gacCCAAUCCC    UCGGGGU GAgggg uucuu c
-uguc    c           AGCU       -      u     c 

Annotation confidence High

Genome context

1: 52846588-52846679 [-]

Mature eca-miR-1296-5p

• Accession: MIMAT0012890
• Description: Equus caballus eca-miR-1296-5p mature miRNA
• Sequence: 16 - UUAGGGCCCUGGCUCCAUCUCCU - 38
• Evidence: not_experimental

Mature eca-miR-1296-3p

• Accession: MIMAT0051313
• Description: Equus caballus eca-miR-1296-3p mature miRNA
• Sequence: 60 - AGUGGGGCUUCGACCCUAACC - 80
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131