Stem-loop eca-mir-107b

Accession

MI0012643

Description

Equus caballus eca-mir-107b precursor miRNA

Literature search

2 open access papers mention eca-mir-107b
(3 sentences)

Sequence

845373 reads, 2086.0 reads per million, 238 experiments

cucucugcuuucAGCUUCUUUACAGUGUUGCCUUGuggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcacaga
.(((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))

Structure

c   c      --c    U  U           C   u   a 
 ucu ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 

Annotation confidence High

Genome context

1: 38999016-38999096 [+]

Mature eca-miR-107b-5p

• Accession: MIMAT0051312
• Description: Equus caballus eca-miR-107b-5p mature miRNA
• Sequence: 13 - AGCUUCUUUACAGUGUUGCCUUG - 35
• Evidence: not_experimental

Mature eca-miR-107b-3p

• Accession: MIMAT0012886
• Description: Equus caballus eca-miR-107b-3p mature miRNA
• Sequence: 50 - AGCAGCAUUGUACAGGGCUAUCA - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131