Stem-loop dsi-mir-983a

Accession

MI0011791

Description

Drosophila simulans dsi-mir-983a precursor miRNA

Gene family

MIPF0000450; mir-983

Sequence

uugcuuugcauaugauaucuugcaguaauuuAGUAAUACCUUUCGAACACAUGAuuuucagucauucAUGAGUUCGUCAGGUAUUAUCUAguuauuguaaacauucaacucgcuggcgga
(((((..((...(((....(((((((((((..(((((((((..(((((.(((((...........))))).)))))..)))))))))..)))))))))))....)))....)).))))).

Structure

-     uu  -aua   uauc           uA         UU     A     uuuu 
 uugcu  gc    uga    uugcaguaauu  GUAAUACCU  CGAAC CAUGA    c
 |||||  ||    |||    |||||||||||  |||||||||  ||||| |||||    a
 ggcgg  cg    acu    aauguuauugA  UAUUAUGGA  GCUUG GUAcu    g
a     -u  cuca   uaca           UC         CU     A     uacu 

Annotation confidence Not enough data

Genome context

chrX: 3277334-3277453 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-983a

Mature dsi-miR-983a-5p

• Accession: MIMAT0012525
• Description: Drosophila simulans dsi-miR-983a-5p mature miRNA
• Sequence: 32 - AGUAAUACCUUUCGAACACAUGA - 54
• Evidence: experimental ; Illumina [1-2]

Mature dsi-miR-983a-3p

• Accession: MIMAT0012526
• Description: Drosophila simulans dsi-miR-983a-3p mature miRNA
• Sequence: 68 - AUGAGUUCGUCAGGUAUUAUCUA - 90
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250