miRBase entry: dsi-mir-982b

Stem-loop dsi-mir-982b

Accession

MI0011783

Description

Drosophila simulans dsi-mir-982b precursor miRNA

Gene family

MIPF0000843; mir-982

Sequence

aguuaaaaaacaaaaucaugcuagaucaagaacaAAUAUCAUGUAAAUUGAuuuuuuaaaucAACUACACGAUAUUCGUUCUUGagcuuaaugguucuagagcu
.............((((((...((.((((((((.((((((.((((..(((((((...))))))).)))).)))))).)))))))).))..))))))........

Structure

aguuaaaaaacaa      gcu  a        a      A    AA       u 
             aaucau   ag ucaagaac AAUAUC UGUA  UUGAuuu  
             ||||||   || |||||||| |||||| ||||  ||||||| u
             uuggua   uc aGUUCUUG UUAUAG ACAU  AAcuaaa  
-----ucgagauc      -au  g        C      C    -C       u

Annotation confidence Not enough data

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Genome context

chrX: 3273921-3274024 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-982b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-982b-3p

Accession	MIMAT0012514
Description	Drosophila simulans dsi-miR-982b-3p mature miRNA
Sequence	63 - AACUACACGAUAUUCGUUCUUG - 84
Evidence	experimental Illumina [1-2]

Mature dsi-miR-982b-5p

Accession	MIMAT0037360
Description	Drosophila simulans dsi-miR-982b-5p mature miRNA
Sequence	35 - AAUAUCAUGUAAAUUGA - 51
Evidence	experimental Illumina [2]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250