Stem-loop dsi-mir-1001

Accession

MI0011776

Description

Drosophila simulans dsi-mir-1001 precursor miRNA

Gene family

MIPF0001048; mir-1001

Sequence

gcccgcgaugauguaagcuggccugucccUGGGUAAACUCCCAAGGAUCAGGuggagauugaauccCGAUCCUUGGGUUUCUGCUCUCGggcaaggucagcagugcccgcgaagggcc
((((.((.((..(((.((((((((((((..(((((....((((((((((.((............)).))))))))))....)))))..)))).))))))))..))).))))..)))).

Structure

-    -g  a  au   -a        -    cU     AACU          A  uggag 
 gccc  cg ug  gua  gcuggccu gucc  GGGUA    CCCAAGGAUC GG     a
 ||||  || ||  |||  |||||||| ||||  |||||    |||||||||| ||      
 cggg  gc gc  cgu  cgacugga cggG  CUCGU    GGGUUCCUAG cc     u
c    aa  -  -c   ga        a    CU     CUUU          C  uaagu 

Annotation confidence Not enough data

Genome context

Unknown

Mature dsi-miR-1001-5p

• Accession: MIMAT0012506
• Description: Drosophila simulans dsi-miR-1001-5p mature miRNA
• Sequence: 30 - UGGGUAAACUCCCAAGGAUCAGG - 52
• Evidence: experimental ; Illumina [1]

Mature dsi-miR-1001-3p

• Accession: MIMAT0012507
• Description: Drosophila simulans dsi-miR-1001-3p mature miRNA
• Sequence: 67 - CGAUCCUUGGGUUUCUGCUCUCG - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9