miRBase entry: dsi-mir-992

Stem-loop dsi-mir-992


Accession
MI0011764
Description
Drosophila simulans dsi-mir-992 precursor miRNA


Sequence

auuuucgcaaguGCCUGGUUUCAGAGAGGUGUAauuuuuguuguauaguaCCCUUUUUUGGAACCAAGCCCUuugagaaa
.((((((.(((.((.((((((((((((((.(((...............))).)))))))))))))).)).))))))))).

Structure
a      c   u  C              U   auuuuu 
 uuuucg aag GC UGGUUUCAGAGAGG GUA      g
 |||||| ||| || |||||||||||||| |||      u
 aagagu uUC CG ACCAAGGUUUUUUC Cau      u
a      -   C  A              C   gauaug 


Annotation confidence Not enough data
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Genome context
chr2R: 15134519-15134598 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from dsi-mir-992
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-992-5p

Accession MIMAT0012491
Description Drosophila simulans dsi-miR-992-5p mature miRNA
Sequence 13 - GCCUGGUUUCAGAGAGGUGUA - 33
Evidence experimental
Illumina [1-2]

Mature dsi-miR-992-3p

Accession MIMAT0012492
Description Drosophila simulans dsi-miR-992-3p mature miRNA
Sequence 51 - CCCUUUUUUGGAACCAAGCCCU - 72
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250