Stem-loop dsi-mir-961

Accession

MI0011753

Description

Drosophila simulans dsi-mir-961 precursor miRNA

Gene family

MIPF0001006; mir-961

Sequence

ugugcucguuaucaugggccgaguuaccUUUGAUCAUCAGUAAGUGAGAUuguuucugauacgauUUCGUUUUCUGGCAAUCAAAGGaacucgacucgacuugaaucuaca
...((((((....))))))((((((.((((((((..((((.((((((((((((.......)))))))))))).))))..))))))))))))))..................

Structure

ugugcucguuaucaugggc      a        CA    U            uu 
                   cgaguu ccUUUGAU  UCAG AAGUGAGAUugu  c
                   |||||| ||||||||  |||| ||||||||||||  u
                   gcucaa GGAAACUA  GGUC UUUGCUUuagca  g
-acaucuaaguucagcuca      -        AC    U            ua 

Annotation confidence Not enough data

Genome context

chr2L: 5434266-5434376 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from dsi-mir-961

Mature dsi-miR-961-5p

• Accession: MIMAT0012469
• Description: Drosophila simulans dsi-miR-961-5p mature miRNA
• Sequence: 29 - UUUGAUCAUCAGUAAGUGAGAU - 50
• Evidence: experimental ; Illumina [1]

Mature dsi-miR-961-3p

• Accession: MIMAT0012470
• Description: Drosophila simulans dsi-miR-961-3p mature miRNA
• Sequence: 66 - UUCGUUUUCUGGCAAUCAAAGG - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9