Stem-loop dsi-mir-1000

Accession

MI0011747

Description

Drosophila simulans dsi-mir-1000 precursor miRNA

Gene family

MIPF0000701; mir-1000

Sequence

ccgugaaaucggacgcuugccauugAUAUUGUCCUGUCACAGCAGUAuuguuacacuauauuauaguuuaCUGCUGGGUCGGGGCAUUAACAuuguugagcgucauuagcaacgagcggc
.(((.......((((((((.((.((.((.(((((((.(.((((((((.......(((((...))))).)))))))).).))))))).)).)).)).)))))))).......)))......

Structure

-----c   gaaaucg        c  u  A  U       U A        uuguuac     a 
      cgu       gacgcuug ca ug UA UGUCCUG C CAGCAGUA       acuau  
      |||       |||||||| || || || ||||||| | ||||||||       ||||| u
      gca       cugcgagu gu AC AU ACGGGGC G GUCGUCau       ugaua  
cggcga   acgauua        u  u  A  U       U G        ------u     u 

Annotation confidence Not enough data

Genome context

chr3R: 21243642-21243761 [-]

Mature dsi-miR-1000-5p

• Accession: MIMAT0012457
• Description: Drosophila simulans dsi-miR-1000-5p mature miRNA
• Sequence: 26 - AUAUUGUCCUGUCACAGCAGUA - 47
• Evidence: experimental ; Illumina [1]

Mature dsi-miR-1000-3p

• Accession: MIMAT0012458
• Description: Drosophila simulans dsi-miR-1000-3p mature miRNA
• Sequence: 71 - CUGCUGGGUCGGGGCAUUAACA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9