miRBase entry: dsi-mir-1002

Stem-loop dsi-mir-1002

Accession

MI0011738

Description

Drosophila simulans dsi-mir-1002 precursor miRNA

Gene family

MIPF0000909; mir-1002

Sequence

ggaaauauuuagaaauuauauauUUAAGUAGUGGAUACAAAAGGCGAuuugauauaaaaguauCGCAUUGUAUGGCCUACUUAACUagcugauuuuguauucc
((((.(((...(((((((..((.((((((((...((((((...(((((.............))))).))))))...)))))))).))..))))))))))))))

Structure

    a   uua       ua  u        UGG      AAG     uugau 
ggaa uau   gaaauua  ua UUAAGUAG   AUACAA   GCGAu     a
|||| |||   |||||||  || ||||||||   ||||||   |||||     u
ccuu aug   uuuuagu  aU AAUUCAUC   UAUGUU   CGCua     a
    -   ---       cg  C        CGG      --A     ugaaa

Annotation confidence Not enough data

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Genome context

chr2L: 13506522-13506624 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dsi-mir-1002

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-1002-5p

Accession	MIMAT0012439
Description	Drosophila simulans dsi-miR-1002-5p mature miRNA
Sequence	24 - UUAAGUAGUGGAUACAAAAGGCGA - 47
Evidence	experimental Illumina [1]

Mature dsi-miR-1002-3p

Accession	MIMAT0012440
Description	Drosophila simulans dsi-miR-1002-3p mature miRNA
Sequence	64 - CGCAUUGUAUGGCCUACUUAACU - 86
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9