miRBase entry: dsi-mir-977

Stem-loop dsi-mir-977

Accession

MI0011729

Description

Drosophila simulans dsi-mir-977 precursor miRNA

Gene family

MIPF0000931; mir-977

Sequence

agugccgaaaaugcaucccaagguaugguuUAGAUAACUCGAAUAUCACAUUUUcaguguucgauaucugaUGAGAUAUUCACGUUGUCUAAaccaugguuuguuuuugaaaacu
.((((.......))))..((((.(((((((((((((((..(((((((.((...((((..........)))))).)))))))..))))))))))))))).))))............

Structure

agugccgaaaaugcaucc    g               UC       A  UUU    uguu 
                  caag uaugguuUAGAUAAC  GAAUAUC CA   Ucag    c
                  |||| |||||||||||||||  ||||||| ||   ||||     
                  guuu guaccaAAUCUGUUG  CUUAUAG GU   aguc    g
------ucaaaaguuuuu    g               CA       A  ---    uaua

Annotation confidence Not enough data

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Genome context

chrX: 15018634-15018748 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-977

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-977-3p

Accession	MIMAT0012423
Description	Drosophila simulans dsi-miR-977-3p mature miRNA
Sequence	72 - UGAGAUAUUCACGUUGUCUAA - 92
Evidence	experimental Illumina [1-2]

Mature dsi-miR-977-5p

Accession	MIMAT0037354
Description	Drosophila simulans dsi-miR-977-5p mature miRNA
Sequence	31 - UAGAUAACUCGAAUAUCACAUUUU - 54
Evidence	experimental Illumina [2]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250