miRBase entry: dps-mir-2560

Stem-loop dps-mir-2560


Accession
MI0011704
Description
Drosophila pseudoobscura dps-mir-2560 precursor miRNA


Sequence

gcaauacauugcuuucagagggcUCGCUCAUCGUUAUUUGAUAGUaaucgcaccugaaauaUGUCAAGUAAUGAUGGGCGUAUAccucccggcaaggucaaacucaauaacauugug
(((((((.(((((....((((...(((((((((((((((((((....((......))....)))))))))))))))))))....))))..))))).)).............))))).

Structure
-     -------------  a     uuca    -gcU                   GUaa  gc 
 gcaau             ac uugcu    gagg    CGCUCAUCGUUAUUUGAUA    uc  a
 |||||             || |||||    ||||    |||||||||||||||||||    ||   
 uguua             ug aacgg    cucc    GCGGGUAGUAAUGAACUGU    ag  c
g     caauaacucaaac  g     --cc    AUAU                   auaa  uc 


Annotation confidence Not enough data
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Genome context
4_group3: 4018595-4018711 [+]

Database links

Mature dps-miR-2560-5p

Accession MIMAT0012382
Description Drosophila pseudoobscura dps-miR-2560-5p mature miRNA
Sequence 24 - UCGCUCAUCGUUAUUUGAUAGU - 45
Evidence experimental
Illumina [1]

Mature dps-miR-2560-3p

Accession MIMAT0012383
Description Drosophila pseudoobscura dps-miR-2560-3p mature miRNA
Sequence 62 - UGUCAAGUAAUGAUGGGCGUAUA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9