Stem-loop dps-mir-2550

Accession

MI0011692

Description

Drosophila pseudoobscura dps-mir-2550 precursor miRNA

Sequence

guucuuccagagcguggaagugaugacggGUAAGGGAAGAGGGUGGUAUUUuccguuuugcuguaaUGACCUCCGCCUUCUUUUGCAGgcgaccacuuccggcuggagcaca
(((((.....(((.((((((((.(..(..((((((((((..((.(((..((.(.((...)).).))..))).))..))))))))))..)..).))))))))))))))))...

Structure

---     uccag   g        a ga gg          AG  U   AU  u c  u 
   guucu     agc uggaagug u  c  GUAAGGGAAG  GG GGU  UU c gu  
   |||||     ||| |||||||| |  |  ||||||||||  || |||  || | || u
   cgagg     ucg gccuucac a  g  CGUUUUCUUC  CC CCA  aa g cg  
aca     -----   -        c gc GA          CG  U   GU  u u  u 

Annotation confidence Not enough data

Genome context

3: 18373452-18373563 [-]

Mature dps-miR-2550-5p

• Accession: MIMAT0012360
• Description: Drosophila pseudoobscura dps-miR-2550-5p mature miRNA
• Sequence: 30 - GUAAGGGAAGAGGGUGGUAUUU - 51
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2550-3p

• Accession: MIMAT0012361
• Description: Drosophila pseudoobscura dps-miR-2550-3p mature miRNA
• Sequence: 67 - UGACCUCCGCCUUCUUUUGCAG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9