miRBase entry: dps-mir-2550

Stem-loop dps-mir-2550


Accession
MI0011692
Description
Drosophila pseudoobscura dps-mir-2550 precursor miRNA


Sequence

guucuuccagagcguggaagugaugacggGUAAGGGAAGAGGGUGGUAUUUuccguuuugcuguaaUGACCUCCGCCUUCUUUUGCAGgcgaccacuuccggcuggagcaca
(((((.....(((.((((((((.(..(..((((((((((..((.(((..((.(.((...)).).))..))).))..))))))))))..)..).))))))))))))))))...

Structure
---     uccag   g        a ga gg          AG  U   AU  u c  u 
   guucu     agc uggaagug u  c  GUAAGGGAAG  GG GGU  UU c gu  
   |||||     ||| |||||||| |  |  ||||||||||  || |||  || | || u
   cgagg     ucg gccuucac a  g  CGUUUUCUUC  CC CCA  aa g cg  
aca     -----   -        c gc GA          CG  U   GU  u u  u 


Annotation confidence Not enough data
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Genome context
3: 18373452-18373563 [-]

Database links

Mature dps-miR-2550-5p

Accession MIMAT0012360
Description Drosophila pseudoobscura dps-miR-2550-5p mature miRNA
Sequence 30 - GUAAGGGAAGAGGGUGGUAUUU - 51
Evidence experimental
Illumina [1]

Mature dps-miR-2550-3p

Accession MIMAT0012361
Description Drosophila pseudoobscura dps-miR-2550-3p mature miRNA
Sequence 67 - UGACCUCCGCCUUCUUUUGCAG - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9