Stem-loop dps-mir-2549

Accession

MI0011691

Description

Drosophila pseudoobscura dps-mir-2549 precursor miRNA

Sequence

ccgaggugucuuacaagcccgucgaggaagcugaggcgGUAAGUCACUGAUUUCUUUAGUcgccuacuuggucUAAGGAUUCAUGUGCUUUCAGcuccaacuggccaucagcucgg
(((((.((........(((.((...(((.(((((......(((.((((((..(((((((..(((.....)))))))))).))).)))))))))))))).)).)))...)).)))))

Structure

     g  ucuuacaa   c  cga   a     ggcgGU   U   -   UU       Uc   u 
ccgag ug        gcc gu   gga gcuga      AAG CAC UGA  UCUUUAG  gcc a
||||| ||        ||| ||   ||| |||||      ||| ||| |||  |||||||  ||| c
ggcuc ac        cgg ca   ccu cGACU      UUC GUG ACU  AGGAAUc  ugg u
     g  -----uac   u  --a   -     ------   -   U   -U       --   u 

Annotation confidence Not enough data

Genome context

XR_group8: 1815816-1815931 [+]

Mature dps-miR-2549-5p

• Accession: MIMAT0012358
• Description: Drosophila pseudoobscura dps-miR-2549-5p mature miRNA
• Sequence: 39 - GUAAGUCACUGAUUUCUUUAGU - 60
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2549-3p

• Accession: MIMAT0012359
• Description: Drosophila pseudoobscura dps-miR-2549-3p mature miRNA
• Sequence: 74 - UAAGGAUUCAUGUGCUUUCAG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9