miRBase entry: dps-mir-2547

Stem-loop dps-mir-2547


Accession
MI0011689
Description
Drosophila pseudoobscura dps-mir-2547 precursor miRNA


Sequence

gccgcgucuuucagGUGAGCAUCCUUACAUUUUGUUcccaguguggAACUGAUUGCAAGCCUGUUUCCAGgagaugcuauauggca
(((((((((((..((.(((((..(((.((.((.(((((......))))).)).)).)))..))))))).)))))))).....))).

Structure
-   -----        ca  U     UC   A  U  U     ca 
 gcc     gcgucuuu  gG GAGCA  CUU CA UU GUUcc  g
 |||     ||||||||  || |||||  ||| || || |||||   
 cgg     cguagagG  CC UUUGU  GAA GU AG CAAgg  u
a   uauau        -A  -     CC   C  U  U     ug 


Annotation confidence Not enough data
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Genome context
XL_group3a: 1376512-1376597 [-]

Database links

Mature dps-miR-2547-5p

Accession MIMAT0012354
Description Drosophila pseudoobscura dps-miR-2547-5p mature miRNA
Sequence 15 - GUGAGCAUCCUUACAUUUUGUU - 36
Evidence experimental
Illumina [1]

Mature dps-miR-2547-3p

Accession MIMAT0012355
Description Drosophila pseudoobscura dps-miR-2547-3p mature miRNA
Sequence 47 - AACUGAUUGCAAGCCUGUUUCCAG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9