Stem-loop dps-mir-2546

Accession

MI0011688

Description

Drosophila pseudoobscura dps-mir-2546 precursor miRNA

Sequence

cacggugaacgGUGAGUGGGAGUCCCAGAGUUACccguuuugggugcacuaaucggUUAGUCUCGGACCCUCACCAGgucugug
(((((.....(((((...((.((((.(((.(((.(((..((((.....)))).))).)))))).)))))))))))....)))))

Structure

     ugaac     GUG  A    C   G   C   uu    g 
cacgg     gGUGA   GG GUCC AGA UUA ccg  uugg u
|||||     |||||   || |||| ||| ||| |||  |||| g
guguc     CCACU   CC CAGG UCU GAU ggc  aauc c
     -ugGA     ---  -    C   -   U   -u    a 

Annotation confidence Not enough data

Genome context

XL_group1e: 5401255-5401338 [+]

Mature dps-miR-2546-5p

• Accession: MIMAT0012352
• Description: Drosophila pseudoobscura dps-miR-2546-5p mature miRNA
• Sequence: 12 - GUGAGUGGGAGUCCCAGAGUUAC - 34
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2546-3p

• Accession: MIMAT0012353
• Description: Drosophila pseudoobscura dps-miR-2546-3p mature miRNA
• Sequence: 57 - UUAGUCUCGGACCCUCACCAG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9