miRBase entry: dps-mir-2543b-1

Stem-loop dps-mir-2543b-1


Accession
MI0011686
Description
Drosophila pseudoobscura dps-mir-2543b-1 precursor miRNA


Sequence

ccugccagagagggcuuuugguuuAUCCUAUGUGCUGUGGCUUAUGuacaauucgaaagucaUAUGCCACGGCGGAUAGGAGCAaucauuagccacaaagccaacuauccguggga
(((((...((..(((((((((((..((((((.(((((((((.((((.((.........)))))).))))))))).)))))).........))))).))))))..))....))))).

Structure
-     -cag  ag      -     -------uA      G         U    u  aau 
 ccugc    ag  ggcuuu ugguu         UCCUAU UGCUGUGGC UAUG ac   u
 |||||    ||  |||||| |||||         |||||| ||||||||| |||| ||   c
 gggug    uc  ccgaaa accga         AGGAUA GCGGCACCG AUac ug   g
a     ccua  aa      c     uuacuaACG      G         U    -  aaa 


Annotation confidence Not enough data
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Genome context
XL_group1e: 8380575-8380690 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from dps-mir-2543b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2543b-5p

Accession MIMAT0012346
Description Drosophila pseudoobscura dps-miR-2543b-5p mature miRNA
Sequence 25 - AUCCUAUGUGCUGUGGCUUAUG - 46
Evidence experimental
Illumina [1]

Mature dps-miR-2543b-3p

Accession MIMAT0012347
Description Drosophila pseudoobscura dps-miR-2543b-3p mature miRNA
Sequence 63 - UAUGCCACGGCGGAUAGGAGCA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9