miRBase entry: dps-mir-2540

Stem-loop dps-mir-2540


Accession
MI0011675
Description
Drosophila pseudoobscura dps-mir-2540 precursor miRNA


Sequence

uguauauuucaaauguuuuuaguucUUCAGAUCGCCAGGUAUUAUAUGuaauacuuaaaaaccgUGUUAUACCGGUCAUCUGAAGAauuauuuaccacagaaagcaaca
(((...((((....((...(((((((((((((.(((.(((((.(((((..............))))).)))))))).)))))))))))))...))....))))...)))

Structure
   aua    aaau  uuu             C   A     U     uaauac 
ugu   uuuc    gu   uaguucUUCAGAU GCC GGUAU AUAUG      u
|||   ||||    ||   ||||||||||||| ||| ||||| |||||       
aca   aaag    ca   auuaAGAAGUCUA UGG CCAUA UGUgc      u
   acg    acac  uuu             C   -     U     caaaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
XL_group1e: 8367333-8367441 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from dps-mir-2540
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2540-5p

Accession MIMAT0012336
Description Drosophila pseudoobscura dps-miR-2540-5p mature miRNA
Sequence 26 - UUCAGAUCGCCAGGUAUUAUAUG - 48
Evidence experimental
Illumina [1]

Mature dps-miR-2540-3p

Accession MIMAT0012337
Description Drosophila pseudoobscura dps-miR-2540-3p mature miRNA
Sequence 65 - UGUUAUACCGGUCAUCUGAAGA - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9