miRBase entry: dps-mir-2538

Stem-loop dps-mir-2538


Accession
MI0011672
Description
Drosophila pseudoobscura dps-mir-2538 precursor miRNA


Sequence

gaacacuguuuuaugcgguugaaguagUAGGUGGAAGAACUAAAAUAUUuguauauuuucaauugaaUAAAUUAGAUUUUCUGCCUGCAacuucgauucgcaacgaccccuguuua
(((((..(((...((((((((((((.((((((((((((.((((..((((((............))))))..)))).)))))))))))).))))))).)))))..)))...))))).

Structure
-     -cu   uua     -       a            A    AA      uauau 
 gaaca   guu   ugcgg uugaagu gUAGGUGGAAGA CUAA  UAUUug     u
 |||||   |||   ||||| ||||||| |||||||||||| ||||  ||||||      
 uuugu   cag   acgcu agcuuca CGUCCGUCUUUU GAUU  AUaagu     u
a     ccc   -ca     u       A            A    AA      uaacu 


Annotation confidence Not enough data
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Genome context
XL_group1e: 8363244-8363359 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from dps-mir-2538
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2538-5p

Accession MIMAT0012330
Description Drosophila pseudoobscura dps-miR-2538-5p mature miRNA
Sequence 28 - UAGGUGGAAGAACUAAAAUAUU - 49
Evidence experimental
Illumina [1]

Mature dps-miR-2538-3p

Accession MIMAT0012331
Description Drosophila pseudoobscura dps-miR-2538-3p mature miRNA
Sequence 68 - UAAAUUAGAUUUUCUGCCUGCA - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9